Update 2008-04-24: as commenter Jakub Narebski correctly points out, it should be better to use core.autocrlf and crlf attribute for resolving this issue, but I have had no chance to test this up to now. The solution below is still valid, but more of the sort of an ugly hack.
Update 2008-06-11: I have stopped using this solution and only use “git-config core.autocrlf true” and “git-config core.safecrlf true” any more. It works reliably and is exactly what I need and not such an ugly hack.
Update 2008-06-22: Well, of course you can still get “You have some suspicious patch lines” if you follow the core.autocrlf approach… but this time it really means you have trailing whitespace, not just line-breaks. If you really don’t care about trailing white-space at all, my initial solution is still valid, as it simply disables this check.
If you are using Git under Windows using cygwin, and you got through the initial problems, you will soon realize that Git likes to fail with “You have some suspicious patch lines” when committing.
The cause for this problem is the carriage-return/line-feed problem of Git under Windows/cygwin: The patches contain a trailing line-feed if you edited them with a Windows editor and not strictly inside cygwin. This will trigger the pre-commit hook to fail on patches where the last line of a file has been changed.
To solve the problem, you need to edit .git/hooks/pre-commit and comment out the following lines:
if (/\s$/) {
bad_line("trailing whitespace", $_);
}
Now committing should work.